Biotech Studies
2024, Vol 33, Num, 1 (Pages: 013-022)
Research advances of deciphering Shalgam microbiota profile and dynamics
Mustafa Yavuz 1 ,Halil Rıza Avcı 1
1 Central Research Institute of Food and Feed Control, Republic of Türkiye Ministry of Agriculture and Forestry, 16160, Osmangazi, Bursa, Türkiye
DOI :
10.38042/biotechstudies.1422918
-
The relationship between the microbiota and their functions in the quality and
characteristic flavors of the fermented foods that provide them autochthonous
attributes has been remained elusive, so far. With the demand in elucidating the
microbiota of the autochthonous fermented foods, the characterization of the
shalgam microbiota via culture-dependent and culture-independent methods has
been carried out. To shed light on shalgam microbiota harboring Lactic acid bacteria
(LAB) and yeasts, microorganisms isolated from shalgam have been identified by
culture-dependent methods including 16S rRNA and ITS (Internal Transcribed Spacer)
gene regions sequencing, RAPD-PCR, Rep-PCR, and API CHL50. Culture-independent
characterization methods such as 16S rRNA and ITS meta-barcoding sequencing were
performed to pinpoint the microbial diversity within shalgam. More recently,
bioinformatics and in vitro analysis of bacteria and yeast isolated from shalgam to find
prospective probiotics and elucidate shalgam microbiota dynamics due to the types of
salts used in shalgam production have been reported. In this review, we intend to
collate the data on microorganisms identified via culture-dependent and cultureindependent
methods. Taken together, we presented a broad perspective on the
shalgam microbiota and how future endeavors in shalgam microbiota research can
move forward.
Keywords :
Shalgam microbiota Culture-independent Culture-dependent methods Lactic acid bacteria Yeast